Last updated on 2025-06-15 19:50:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 21.92 | 58.85 | 80.77 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 13.95 | 44.35 | 58.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 105.29 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 130.35 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 31.00 | 89.00 | 120.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 19.63 | 53.92 | 73.55 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 19.47 | 55.43 | 74.90 | OK | |
| r-release-macos-arm64 | 1.2.0 | 49.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 72.00 | NOTE | |||
| r-release-windows-x86_64 | 1.2.0 | 34.00 | 89.00 | 123.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 51.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 58.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.2.0 | 36.00 | 112.00 | 148.00 | ERROR |
Version: 1.1.0
Check: Rd files
Result: NOTE
checkRd: (-1) read_packedancestrymap.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:7-11: Lost braces
7 | \item{snp_data}{snp_data}{File name read from working directory.
| ^
checkRd: (-1) smart_mva.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:102-103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:106-109: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_mva.Rd:119: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_pca.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_pca.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_pca.Rd:64-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:71-73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:75-76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permanova.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:78-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:85-86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smart_permdisp.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavor: r-oldrel-macos-x86_64
Version: 1.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Converting_VCF_and_PLINK_formats.Rmd' using rmarkdown
File figure/data_transformation_example_plot-1.png not found in resource path
Error: processing vignette 'Converting_VCF_and_PLINK_formats.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'Converting_VCF_and_PLINK_formats.Rmd'
--- re-building 'aDNA_smartpca_analysis.Rmd' using rmarkdown
File figure/lazaridis_plot-1.png not found in resource path
Error: processing vignette 'aDNA_smartpca_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'aDNA_smartpca_analysis.Rmd'
--- re-building 'mallard_smartpca_analysis.Rmd' using rmarkdown
File figure/pca_plot_mallard-1.png not found in resource path
Error: processing vignette 'mallard_smartpca_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'mallard_smartpca_analysis.Rmd'
SUMMARY: processing the following files failed:
'Converting_VCF_and_PLINK_formats.Rmd' 'aDNA_smartpca_analysis.Rmd'
'mallard_smartpca_analysis.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64