Last updated on 2025-12-12 06:50:29 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.89 | 764.75 | 803.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.84 | 497.27 | 521.11 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 212.00 | 1170.21 | 1382.21 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 269.00 | 1093.39 | 1362.39 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 54.55 | 699.28 | 753.83 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 37.45 | 708.26 | 745.71 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 525.00 | 562.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 119.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 66.00 | 513.00 | 579.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 638.00 | 690.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-12 17:16:56.800749: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.801003: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.804825: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:56.811284: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:56.822362: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.822542: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.824774: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:56.830072: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:56.837078: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.837263: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.841701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:56.857161: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:56.857577: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:56.862918: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.863102: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.86755: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:56.883458: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:56.883921: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:56.903125: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.903264: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.907639: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:56.940758: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:56.956985: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:56.957195: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:56.96608: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.045806: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.046909: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.079563: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.079715: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.082313: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.088492: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.095368: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.09557: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.100109: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.115257: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.115713: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.145548: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.145704: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.148031: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.154165: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.16646: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.166701: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.171342: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.186372: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.186836: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.213252: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.21343: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.215715: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.221743: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.232171: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.232343: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.237193: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.252278: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.2527: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.271621: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.271767: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.273935: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.280026: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.289784: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.289949: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.294699: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.310221: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.310735: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.328899: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.329068: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.33159: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.337808: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.350048: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.350263: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.354949: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.369832: embedding
> test_pipeop_isomap.R: 2025-12-12 17:16:57.370328: DONE
> test_pipeop_isomap.R: 2025-12-12 17:16:57.391668: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.391818: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.394249: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.400205: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.416501: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.416624: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.423875: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.430134: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 17:16:57.436497: Isomap START
> test_pipeop_isomap.R: 2025-12-12 17:16:57.436631: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 17:16:57.438884: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 17:16:57.444862: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [301s/274s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-12 00:00:05.684176: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:05.699323: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:05.724139: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:05.753341: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:05.85613: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:05.856419: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:05.864243: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:05.908665: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:05.960622: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:05.961202: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:05.987411: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:06.061633: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:06.067839: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:06.088343: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:06.088643: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:06.114399: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:06.195125: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:06.196308: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:06.298767: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:06.29906: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:06.326419: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:06.503782: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:06.55032: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:06.560844: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:06.643511: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:07.005214: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:07.00899: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:07.200458: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:07.200752: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:07.2183: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:07.248922: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:07.283419: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:07.283853: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:07.306153: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:07.374573: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:07.375651: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:07.568934: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:07.569226: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:07.604181: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:07.638509: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:07.698166: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:07.698588: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:07.72898: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:07.819916: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:07.820958: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:07.953662: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:07.953962: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:07.967619: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.015518: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:08.098419: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:08.098846: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:08.128264: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.216062: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:08.217375: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:08.330459: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:08.330772: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:08.345231: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.372836: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:08.436442: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:08.447031: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:08.471405: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.558659: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:08.559761: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:08.657468: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:08.657763: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:08.671806: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.708354: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:08.774192: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 00:00:08.774613: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:08.788538: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:08.88722: embedding
> test_pipeop_isomap.R: 2025-12-12 00:00:08.889058: DONE
> test_pipeop_isomap.R: 2025-12-12 00:00:09.021906: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:09.02221: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:09.029399: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:09.058986: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:09.165612: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:09.165898: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:09.184238: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:09.218495: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 00:00:09.268199: Isomap START
> test_pipeop_isomap.R: 2025-12-12 00:00:09.268476: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 00:00:09.291871: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 00:00:09.328242: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [265s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-08 16:48:22.131556: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.132692: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.149989: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.178521: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.253759: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.254402: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.265433: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.286387: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.328776: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.329903: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.352758: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.40449: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:22.406721: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:22.446992: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.44767: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.488391: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.541501: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:22.543357: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:22.675607: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.676303: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.695814: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.812078: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.867537: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.868545: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.934161: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.188579: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:23.194143: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:23.414131: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.414784: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.4254: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.448099: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:23.495179: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.496186: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.596655: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.650785: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:23.65256: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:23.884497: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.885129: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.895987: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.918944: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:23.988746: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.989638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.014395: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.064008: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.065945: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.183548: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.184037: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.191244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.207469: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.289423: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.290575: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.311283: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.360572: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.362498: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.472393: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.473096: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.481745: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.497991: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.564935: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.565833: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.598008: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.646507: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.647752: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.74044: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.740886: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.749412: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.771582: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.819064: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.819693: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.834576: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.884979: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.887043: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:25.799923: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:25.800654: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:25.813274: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:25.83647: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:25.960827: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:25.961606: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:25.973366: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:25.996246: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:26.034493: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:26.035251: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:26.047275: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:26.070344: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64