# Microbe-Metabolite Interactions-Based Metabolic Profiles Predictor

## Documentation for package ‘MMINP’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

checkInputdata | Check if input data satisfies input conditions
compareFeatures | Compare features' abundance obtained by prediction and measurement.
filterFeatures | Filter features of input table according to prevalence and/or abundance
get_Components | Estimate components for O2-PLS method
get_cvo2mComponent | get components number from Cross-validate procedure of O2PLS
MMINP.predict | Predict metabolites from new microbiome samples using MMINP model.
MMINP.preprocess | Data Preprocessing function for MMINP
MMINP.train | Train MMINP model using paired microbial features and metabolites data
MMINP_trained_model | (Data) A MMINP model
print.mminp | Print function for MMINP.train
test_metab | (Data) Normalized metabolite abundances for MMINP prediction
test_metag | (Data) Normalized gene family abundances for MMINP prediction
train_metab | (Data) Normalized metabolite abundances for MMINP training
train_metag | (Data) Normalized gene family abundances for MMINP training