# Biotic Ligand Model Engine

## Documentation for package ‘BLMEngineInR’ version 0.1.7

- DESCRIPTION file.
- Package NEWS.

## Help Pages

AddComponents | Add or remove components in the problem
AddCriticalValues | Edit Critical Values Table
AddDefComps | Add or remove components in the problem
AddInComps | Add or remove components in the problem
AddInLabs | Add or remove input labels in a problem
AddInVars | Add or remove a input variables in a problem
AddMassCompartments | Add or remove mass compartments in a problem
AddPhases | Add or remove phase reactions in a problem
AddSpecialDefs | Add or remove species definitions
AddSpecies | Add or remove a species reactions in a problem
All_NIST20170203_reactions | All NIST_20170203.dbs reactions
All_WATER23_reactions | All WATER23.dbs reactions
BlankProblem | Make a blank input problem list object
BlankWHAM | Make a blank WHAM parameter list object
BLM | Run the Biotic Ligand Model
carbonate_system_problem | Carbonate system problem
CheckBLMObject | Check an object for use in the BLMEngineInR package
CHESS | CHemical Equilibria in Soils and Solutions
CommonParameterDefinitions | Common Parameter Definitions
Components | Add or remove components in the problem
ConvertWHAMVThermoFile | Convert from a WHAM V thermodynamic database file
ConvertWindowsParamFile | Convert From a Windows BLM Parameter File
CriticalValues | Edit Critical Values Table
Cu_full_inorganic_problem | Cu problem with only inorganic components
Cu_full_organic_problem | Copper problem with WHAM V organic matter
DefineProblem | Define the speciation problem
DefineWHAM | Read a WHAM file and make a WHAM list
GetData | Get data from the input file
InLabs | Add or remove input labels in a problem
InVars | Add or remove a input variables in a problem
ListCAT | List Critical Accumulation Table
MassCompartments | Add or remove mass compartments in a problem
MatchInputsToProblem | Match Inputs to Problem
MW | Molecular and atomic weights
Ni_full_organic_problem | Ni problem with WHAM V organic matter
Ni_HCO3_full_organic_problem | Ni problem with WHAM V organic matter and NiHCO3 toxic
Phases | Add or remove phase reactions in a problem
ReadInputsFromFile | Read a BLM Input File
RemoveComponents | Add or remove components in the problem
RemoveCriticalValues | Edit Critical Values Table
RemoveDefComps | Add or remove components in the problem
RemoveInComps | Add or remove components in the problem
RemoveInLabs | Add or remove input labels in a problem
RemoveInVars | Add or remove a input variables in a problem
RemoveMassCompartments | Add or remove mass compartments in a problem
RemovePhases | Add or remove phase reactions in a problem
RemoveSpecialDefs | Add or remove species definitions
RemoveSpecies | Add or remove a species reactions in a problem
SpecialDefs | Add or remove species definitions
Species | Add or remove a species reactions in a problem
water_MC_problem | Water mass compartment only problem
water_problem | Water-only problem
WriteDetailedFile | Write a VERY Detailed Output File
WriteInputFile | Write a BLM input file
WriteParamFile | Write a BLM Parameter File
WriteWHAMFile | Write a WHAM Parameter File