# Visualizing Pedigrees with 'ggplot2' and 'plotly'

## Documentation for package ‘ggpedigree’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ASOIAF | A pedigree of ice and fire
calculateConnections | Calculate connections for a pedigree dataset
calculateCoordinates | Calculate coordinates for plotting individuals in a pedigree
computeDistance | Compute distance between two points
countOffspring | Count offspring of each individual
countSiblings | Count siblings of each individual
generateSpouseList | Generate a spouselist matrix
getDefaultPlotConfig | Shared Default Plotting Configuration
ggPedigree | Plot a custom pedigree diagram
ggpedigree | Plot a custom pedigree diagram
ggPedigreeInteractive | Interactive pedigree plot (Plotly wrapper around ggPedigree)
ggPhenotypeByDegree | Plot correlation of genetic relatedness by phenotype
ggRelatednessMatrix | Plot a relatedness matrix as a heatmap (ggpedigree style)
kinship2_autohint | Automatically generate alignment hints for pedigree plotting
kinship2_plotPedigree | plotPedigree A wrapped function to plot simulated pedigree from function 'simulatePedigree'. This function require the installation of package 'kinship2'.
optimizePedigree | Optimize Pedigree Plot
optimizePlotlyPedigree | Optimize Plotly Pedigree Plot
pedigree | Create a pedigree or pedigreeList object
plotPedigree | plotPedigree A wrapped function to plot simulated pedigree from function 'simulatePedigree'. This function require the installation of package 'kinship2'.
print.pedigree | Create a pedigree or pedigreeList object
print.pedigreeList | Create a pedigree or pedigreeList object
redsquirrels | Kluane Red Squirrel Data
redsquirrels_full | Kluane Red Squirrel Data
warsofroses | Wars of the Roses Pedigree Data
[.pedigree | Create a pedigree or pedigreeList object
[.pedigreeList | Create a pedigree or pedigreeList object