CimpleG                 Find simple CpG (CimpleG) signatures.
compute_ax              Feature selection function used in the sigma
                        delta space
compute_diffmeans_sumvar
                        Compute diff mean sum var dataframe
darken                  Helper function to darken down a given color.
deconv_pred_obs_plot    Scatter plots of observed (true) vs predicted
                        values for deconvolution.
deconv_ranking_plot     Boxplot and rankings of deconvolution metrics
                        for deconvolution results.
deconvolution_barplot   Stacked barplot of deconvolution results
deconvolution_epidish   EpiDISH deconvolution
deconvolution_nmf       NMF deconvolution
deconvolution_nnls      NNLS deconvolution
diffmeans_sumvariance_plot
                        Creates the old version of the difference in
                        means by sum of variances plot
dmsv_plot               Creates the old version of the difference in
                        means by sum of variances plot
eval_test_data          Evaluation of produced models on test data
get_cpg_annotation      Get CpG annotation from Illumina
lighten                 Helper function to lighten up a given color.
load_object             Load an R object saved with CimpleG or an RDS
                        file.
make_color_palette      Make color palette data frame
make_deconv_pred_obs_data
                        Make tidy data for use in deconvolution plots
make_deconv_ref_matrix
                        Build deconvolution reference matrix
predict.CimpleG         Predict outcome from a CimpleG signatures on
                        new data
run_deconvolution       Perform deconvolution on a new set of samples,
                        based on the CimpleG models trained
save_object             Save an R object to disk with fast and
                        efficient compression algorithms.
select_features         Feature selection function used in the
                        diffmeans, sumvariance space
signature_plot          CpG signature plot
test_data               Cell line test data
test_targets            Cell line test data targets
train_data              Cell line train data
train_targets           Cell line train data targets
