# Fitting Household Transmission Model to Estimate Household Transmission Dynamics of Influenza

## Documentation for package ‘hhdynamics’ version 1.3.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

coef.hhdynamics_fit | Extract model coefficients from hhdynamics_fit
create_wide_data | Create a wide format of household data
household_dynamics | Fit a household transmission model via MCMC
inputdata | Example of input data
para | Example of parameter vector for the main model
plot.hhdynamics_fit | Plot method for hhdynamics_fit objects
plot_attack_rate | Plot secondary attack rates
plot_covariates | Forest plot of covariate effects
plot_diagnostics | MCMC diagnostic plots
plot_household | Plot household infection timeline
plot_transmission | Plot transmission probability over time since onset
print.hhdynamics_fit | Print method for hhdynamics_fit
print.summary.hhdynamics_fit | Print method for summary.hhdynamics_fit
run_MCMC | Run the MCMC for the household transmission model
SI | Example of serial interval distribution of influenza
simulate_data | Simulate household transmission data
summary.hhdynamics_fit | Summary method for hhdynamics_fit
table_attack_rates | Table of secondary attack rates
table_covariates | Table of covariate effects (odds ratios)
table_parameters | Table of transmission parameter estimates